Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsular polysaccharide biosynthesis protein | CLV88_12117 | Not Available | Positive | 4274105 - 4275043 | 35356.2 |
| putative dehydrogenase | CLV88_12118 | Not Available | Positive | 4275110 - 4276075 | 35055.5 |
| citrate transporter | CLV88_12119 | Not Available | Negative | 4276164 - 4278047 | 67174.5 |
| hypothetical protein | CLV88_12120 | Not Available | Positive | 4278336 - 4278695 | 12849.6 |
| hypothetical protein | CLV88_12121 | Not Available | Negative | 4278981 - 4279703 | 25468.3 |
| oligoendopeptidase f | CLV88_12122 | Not Available | Negative | 4280025 - 4281845 | 68266.3 |
| lysophospholipase | CLV88_12123 | Not Available | Negative | 4282027 - 4282965 | 34902.6 |
| scp-2 sterol transfer family protein | CLV88_12124 | Not Available | Negative | 4282965 - 4283255 | 9714.37 |
| hypothetical protein | CLV88_12125 | Not Available | Positive | 4283260 - 4283919 | 24310.3 |
| atp-dependent rna helicase supv3l1/suv3 | CLV88_12126 | Not Available | Positive | 4283959 - 4286814 | 104703.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
