Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_12071 | Not Available | Positive | 4247177 - 4247947 | 26562.7 |
| uncharacterized protein duf993 | CLV88_12072 | Not Available | Positive | 4247958 - 4249106 | 41530.7 |
| sugar phosphate isomerase/epimerase | CLV88_12073 | Not Available | Positive | 4249106 - 4249954 | 30313.1 |
| hypothetical protein | CLV88_12074 | Not Available | Positive | 4249979 - 4250057 | 2870.67 |
| outer membrane autotransporter protein | CLV88_1211 | Not Available | Positive | 4250169 - 4251554 | 50223.5 |
| arylsulfatase | CLV88_1212 | Not Available | Negative | 4252057 - 4253796 | 64482.5 |
| lysr family transcriptional regulator | CLV88_1213 | Not Available | Positive | 4253942 - 4254847 | 33196.9 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_1214 | Not Available | Negative | 4254892 - 4255923 | 36967.0 |
| glutamine synthetase | CLV88_1215 | Not Available | Negative | 4255950 - 4257398 | 52968.9 |
| iclr family transcriptional regulator | CLV88_1216 | Not Available | Positive | 4257568 - 4258338 | 26786.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
