Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h dehydrogenase (quinone) | CLV88_12061 | Not Available | Positive | 4236947 - 4237516 | 21238.4 |
| quinol monooxygenase ygin | CLV88_12062 | Not Available | Positive | 4237516 - 4237815 | 11243.4 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | CLV88_12063 | Not Available | Positive | 4237903 - 4239405 | 53446.6 |
| choline dehydrogenase | CLV88_12064 | Not Available | Positive | 4239405 - 4241006 | 57619.1 |
| 2,5-diketo-d-gluconate reductase b | CLV88_12065 | Not Available | Negative | 4241078 - 4241896 | 30297.9 |
| propionate coa-transferase | CLV88_12066 | Not Available | Positive | 4242074 - 4243645 | 55554.5 |
| enoyl-coa hydratase/carnithine racemase | CLV88_12067 | Not Available | Positive | 4243642 - 4244409 | 27114.8 |
| acyl dehydratase | CLV88_12068 | Not Available | Negative | 4244422 - 4244883 | 16530.7 |
| d-threo-aldose 1-dehydrogenase | CLV88_12069 | Not Available | Negative | 4244880 - 4245896 | 37722.6 |
| hypothetical protein | CLV88_12070 | Not Available | Positive | 4246035 - 4247180 | 41233.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
