Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-methylhydantoinase b | CLV88_12051 | Not Available | Positive | 4226584 - 4228326 | 61843.4 |
| hypothetical protein | CLV88_12052 | Not Available | Negative | 4228267 - 4228395 | 5008.38 |
| putative damage-inducible protein dinb | CLV88_12053 | Not Available | Positive | 4228485 - 4228982 | 18551.0 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_12054 | Not Available | Negative | 4229050 - 4230183 | 39810.9 |
| tetr family transcriptional regulator | CLV88_12055 | Not Available | Negative | 4230289 - 4230921 | 23928.9 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_12056 | Not Available | Positive | 4231125 - 4232231 | 39762.6 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_12057 | Not Available | Positive | 4232396 - 4233439 | 37405.7 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_12058 | Not Available | Positive | 4233449 - 4234951 | 55360.6 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_12059 | Not Available | Positive | 4234961 - 4235905 | 32804.5 |
| l-iditol 2-dehydrogenase | CLV88_12060 | Not Available | Positive | 4235902 - 4236933 | 36523.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
