Shimia abyssi str. DSM 100673

star/dumbbell/pleomorphicaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia abyssi str. DSM 100673 is a Gram-negative bacterium that thrives in deep seawater environments. This organism is classified as an organotroph and chemotroph, utilizing organic compounds as its primary energy source. It demonstrates an aerobic metabolism, requiring oxygen for growth. Morphologically, Shimia abyssi exhibits a pleomorphic shape, with star or dumbbell configurations, and is characterized as non-motile. It is mesophilic, with an optimal growth temperature of 25°C, indicating its adaptation to relatively moderate thermal conditions typically found in deep-sea ecosystems. This bacterium has a single replicon and does not form spores, which may reflect its specialized adaptation to the stable and nutrient-rich conditions of its deep-sea habitat. The genome accession number for Shimia abyssi is PYGJ00000000.1. The ecological significance of Shimia abyssi str. DSM 100673 lies in its role in the deep-sea microbial community, where it may contribute to nutrient cycling and organic matter degradation. As an aerobic organism in a habitat where oxygen levels can vary, it may also play a part in the dynamics of oxygen utilization within its ecosystem, showcasing how deep-sea microbes can adapt to specific environmental niches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia abyssi
StrainDSM 100673

Profile

Physiology
Gram staining propertiesGram-negative
Shapestar/dumbbell/pleomorphic
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatdeep seawater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Shimia abyssi strain DSM 100673 Ga0181044_148, whole genome

Gene Summary

Adenine Count

1044865 bp

Thymine Count

1029763 bp

Guanine Count

1300044 bp

Cytosine Count

1357929 bp

Genome Length

4732601 bp

Protein-coding Genes

4533 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-methylhydantoinase bCLV88_12051Not AvailablePositive4226584 - 422832661843.4
hypothetical proteinCLV88_12052Not AvailableNegative4228267 - 42283955008.38
putative damage-inducible protein dinbCLV88_12053Not AvailablePositive4228485 - 422898218551.0
amino acid/amide abc transporter substrate-binding protein (haat family)CLV88_12054Not AvailableNegative4229050 - 423018339810.9
tetr family transcriptional regulatorCLV88_12055Not AvailableNegative4230289 - 423092123928.9
monosaccharide abc transporter substrate-binding protein (cut2 family)CLV88_12056Not AvailablePositive4231125 - 423223139762.6
monosaccharide abc transporter membrane protein (cut2 family)CLV88_12057Not AvailablePositive4232396 - 423343937405.7
monosaccharide abc transporter atp-binding protein (cut2 family)CLV88_12058Not AvailablePositive4233449 - 423495155360.6
monosaccharide abc transporter membrane protein (cut2 family)CLV88_12059Not AvailablePositive4234961 - 423590532804.5
l-iditol 2-dehydrogenaseCLV88_12060Not AvailablePositive4235902 - 423693336523.4

Displaying genes 4141 – 4150 of 4601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.