Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12031 | Not Available | Negative | 4202172 - 4203599 | 53367.7 |
| crotonobetaine/carnitine-coa ligase | CLV88_12032 | Not Available | Negative | 4204057 - 4205658 | 59088.8 |
| cardiolipin synthase | CLV88_12033 | Not Available | Positive | 4205773 - 4207182 | 52621.2 |
| membrane protein | CLV88_12034 | Not Available | Negative | 4207142 - 4208002 | 31453.6 |
| hypothetical protein | CLV88_12035 | Not Available | Positive | 4208614 - 4209336 | 26329.4 |
| arac family transcriptional regulator | CLV88_12036 | Not Available | Negative | 4209341 - 4210348 | 37829.9 |
| amino acid synthesis protein | CLV88_12037 | Not Available | Negative | 4210411 - 4210992 | 20681.2 |
| hypothetical protein | CLV88_12038 | Not Available | Negative | 4210985 - 4211827 | 29206.1 |
| 6-hydroxynicotinate reductase | CLV88_12039 | Not Available | Negative | 4211830 - 4213287 | 51984.1 |
| xanthine dehydrogenase molybdenum binding subunit apoprotein | CLV88_12040 | Not Available | Negative | 4213280 - 4216012 | 95347.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
