Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_12011 | Not Available | Negative | 4183219 - 4183740 | 18808.2 |
| carboxypeptidase taq | CLV88_12012 | Not Available | Negative | 4183824 - 4185299 | 53947.5 |
| cytochrome c oxidase assembly protein subunit 15 | CLV88_12013 | Not Available | Negative | 4185306 - 4186442 | 42084.1 |
| trna/rrna methyltransferase | CLV88_12014 | Not Available | Negative | 4186514 - 4187260 | 27604.1 |
| tfox-like protein | CLV88_12015 | Not Available | Positive | 4187461 - 4187799 | 11934.6 |
| thiamine-phosphate pyrophosphorylase | CLV88_12016 | Not Available | Positive | 4187854 - 4188474 | 22222.3 |
| sugar/nucleoside kinase (ribokinase family) | CLV88_12017 | Not Available | Positive | 4188530 - 4189423 | 31123.0 |
| pseudouridine-5'-phosphate glycosidase | CLV88_12018 | Not Available | Positive | 4189420 - 4190352 | 31671.2 |
| putative mfs family arabinose efflux permease | CLV88_12019 | Not Available | Negative | 4190492 - 4191784 | 46123.6 |
| putative membrane protein | CLV88_12020 | Not Available | Positive | 4192111 - 4192797 | 25217.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
