Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-amino-4-deoxychorismate lyase | CLV88_101377 | Not Available | Negative | 378353 - 379009 | 23621.3 |
| aminodeoxychorismate synthase subunit i | CLV88_101378 | Not Available | Negative | 378964 - 380019 | 37738.1 |
| hypothetical protein | CLV88_101379 | Not Available | Negative | 380072 - 380245 | 6403.84 |
| carbamoyl-phosphate synthase large subunit | CLV88_101380 | Not Available | Positive | 380323 - 383622 | 119168.0 |
| hypothetical protein | CLV88_101381 | Not Available | Negative | 384523 - 385059 | 19450.9 |
| hypothetical protein | CLV88_101382 | Not Available | Negative | 385205 - 385948 | 25973.7 |
| putative chaperone protein | CLV88_101383 | Not Available | Positive | 386098 - 387354 | 45154.3 |
| agmatine deiminase | CLV88_101384 | Not Available | Negative | 387536 - 388606 | 39043.8 |
| acyl-coa dehydrogenase | CLV88_101385 | Not Available | Negative | 389163 - 390503 | 49781.9 |
| Trna-gln | Not Available | Not Available | Positive | 390573 - 390645 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
