Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11978 | Not Available | Negative | 4161949 - 4162461 | 18779.0 |
| alpa family transcriptional regulator | CLV88_11979 | Not Available | Negative | 4162484 - 4162681 | 7428.76 |
| hypothetical protein | CLV88_11980 | Not Available | Negative | 4162950 - 4163843 | 33659.5 |
| hypothetical protein | CLV88_11981 | Not Available | Negative | 4163840 - 4164733 | 33021.0 |
| transcriptional regulator with abiei antitoxin domain of type iv toxin-antitoxin system | CLV88_11982 | Not Available | Negative | 4164733 - 4165833 | 41325.2 |
| uncharacterized protein duf559 | CLV88_11983 | Not Available | Positive | 4165940 - 4166998 | 39798.0 |
| hypothetical protein | CLV88_11984 | Not Available | Negative | 4167286 - 4167975 | 25474.9 |
| hypothetical protein | CLV88_11985 | Not Available | Negative | 4167976 - 4168254 | 10534.0 |
| hemolysin type calcium-binding protein | CLV88_11986 | Not Available | Positive | 4168288 - 4170015 | 58735.3 |
| hypothetical protein | CLV88_11987 | Not Available | Positive | 4170359 - 4170706 | 11990.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
