Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribbon-helix-helix protein | CLV88_11958 | Not Available | Positive | 4135891 - 4136109 | 8160.73 |
| cysteine desulfuration protein sufe | CLV88_11959 | Not Available | Negative | 4136171 - 4136578 | 14930.7 |
| hypothetical protein | CLV88_11960 | Not Available | Positive | 4136709 - 4137218 | 17533.9 |
| ribonuclease d | CLV88_11961 | Not Available | Negative | 4137296 - 4138456 | 43278.9 |
| phosphoribosylglycinamide formyltransferase-1 | CLV88_11962 | Not Available | Negative | 4138542 - 4139090 | 19590.6 |
| phosphoribosylformylglycinamidine cyclo-ligase | CLV88_11963 | Not Available | Negative | 4139132 - 4140178 | 35654.6 |
| Trna-met | Not Available | Not Available | Positive | 4140387 - 4140462 | Not Available |
| hae1 family hydrophobic/amphiphilic exporter-1 | CLV88_11965 | Not Available | Negative | 4140482 - 4143625 | 110784.0 |
| membrane fusion protein (multidrug efflux system) | CLV88_11966 | Not Available | Negative | 4143632 - 4144765 | 41107.9 |
| two-component system osmolarity sensor histidine kinase envz | CLV88_11967 | Not Available | Negative | 4144938 - 4146242 | 48396.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
