Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11948 | Not Available | Positive | 4126557 - 4127036 | 18362.1 |
| hxlr family transcriptional regulator | CLV88_11949 | Not Available | Negative | 4127051 - 4127428 | 14090.3 |
| putative snoal-like aldol condensation-catalyzing enzyme | CLV88_11950 | Not Available | Positive | 4127619 - 4128389 | 27548.6 |
| fumarase class ii | CLV88_11951 | Not Available | Positive | 4128512 - 4129906 | 49432.2 |
| n-acyl-d-aspartate/d-glutamate deacylase | CLV88_11952 | Not Available | Negative | 4130215 - 4131864 | 59979.3 |
| rnd family efflux transporter mfp subunit | CLV88_11953 | Not Available | Negative | 4131928 - 4132800 | 31411.3 |
| hypothetical protein | CLV88_11954 | Not Available | Negative | 4132782 - 4132997 | 8211.97 |
| imidazolonepropionase-like amidohydrolase | CLV88_11955 | Not Available | Negative | 4132994 - 4134328 | 48158.2 |
| arac-like dna-binding protein | CLV88_11956 | Not Available | Positive | 4134407 - 4135459 | 39612.6 |
| uncharacterized protein duf4169 | CLV88_11957 | Not Available | Positive | 4135721 - 4135894 | 6567.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
