Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11938 | Not Available | Negative | 4118875 - 4119579 | 25651.1 |
| putative metal-binding membrane protein | CLV88_11939 | Not Available | Negative | 4119582 - 4120379 | 28819.9 |
| gntr family transcriptional regulator | CLV88_11940 | Not Available | Positive | 4120465 - 4121199 | 26663.7 |
| na/pi-cotransporter | CLV88_11941 | Not Available | Negative | 4121206 - 4122132 | 31267.9 |
| hypothetical protein | CLV88_11942 | Not Available | Positive | 4122303 - 4122779 | 17152.7 |
| ferric reductase like protein | CLV88_11943 | Not Available | Positive | 4122776 - 4123375 | 21424.4 |
| Tmrna,resume consensus sequence (at 196): tacaattgcaaatgacaa | Not Available | Not Available | Positive | 4123401 - 4123735 | Not Available |
| snoal-like polyketide cyclase | CLV88_11945 | Not Available | Positive | 4123864 - 4124292 | 16122.2 |
| hypothetical protein | CLV88_11946 | Not Available | Positive | 4124430 - 4125227 | 28868.5 |
| chromate transporter | CLV88_11947 | Not Available | Positive | 4125253 - 4126476 | 42828.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
