Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_11928 | Not Available | Negative | 4106952 - 4107833 | 32692.3 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_11929 | Not Available | Negative | 4107891 - 4109201 | 47038.8 |
| dna-binding transcriptional lysr family regulator | CLV88_11930 | Not Available | Positive | 4109379 - 4110287 | 33773.9 |
| iron(iii) transport system substrate-binding protein | CLV88_11931 | Not Available | Positive | 4110485 - 4111510 | 36808.1 |
| iron(iii) transport system permease protein | CLV88_11932 | Not Available | Positive | 4111553 - 4113733 | 78625.3 |
| iron(iii) transport system atp-binding protein | CLV88_11933 | Not Available | Positive | 4113730 - 4114803 | 38442.2 |
| 2,4-dienoyl-coa reductase-like nadh-dependent reductase (old yellow enzyme family) | CLV88_11934 | Not Available | Positive | 4114896 - 4116092 | 41823.8 |
| acrylyl-coa reductase (nadph) | CLV88_11935 | Not Available | Negative | 4116202 - 4117194 | 34626.8 |
| dimethylsulfoniopropionate demethylase | CLV88_11936 | Not Available | Negative | 4117251 - 4118354 | 40690.8 |
| putative damage-inducible protein dinb | CLV88_11937 | Not Available | Negative | 4118345 - 4118875 | 19784.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
