Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine synthase a | CLV88_11918 | Not Available | Negative | 4096931 - 4097962 | 36158.1 |
| nudix-type nucleoside diphosphatase (yffh/adpp family) | CLV88_11919 | Not Available | Negative | 4098028 - 4099164 | 42318.0 |
| hypothetical protein | CLV88_11920 | Not Available | Negative | 4099169 - 4099609 | 15609.4 |
| cyclopropane-fatty-acyl-phospholipid synthase | CLV88_11921 | Not Available | Negative | 4099609 - 4100817 | 46117.1 |
| deoxyribodipyrimidine photo-lyase type i | CLV88_11922 | Not Available | Negative | 4100883 - 4102292 | 52825.6 |
| cysteine desulfurase family protein (tigr01976 family) | CLV88_11923 | Not Available | Negative | 4102348 - 4103568 | 43737.8 |
| histidine triad (hit) family protein | CLV88_11924 | Not Available | Negative | 4103575 - 4103991 | 15474.7 |
| glycerophosphoryl diester phosphodiesterase | CLV88_11925 | Not Available | Negative | 4104101 - 4105039 | 34349.9 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_11926 | Not Available | Negative | 4105039 - 4106094 | 37783.0 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_11927 | Not Available | Negative | 4106098 - 4106952 | 31592.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
