Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mg2+/co2+ transporter corb | CLV88_118105 | Not Available | Positive | 4073758 - 4075077 | 47835.2 |
| drug/metabolite transporter (dmt)-like permease | CLV88_118106 | Not Available | Positive | 4075205 - 4076077 | 30764.6 |
| enolase-like protein | CLV88_118107 | Not Available | Positive | 4076206 - 4076300 | 3410.02 |
| hypothetical protein | CLV88_1191 | Not Available | Positive | 4076301 - 4076417 | 4230.16 |
| uncharacterized protein glcg (duf336 family) | CLV88_1192 | Not Available | Positive | 4076414 - 4076833 | 14204.0 |
| choline dehydrogenase-like flavoprotein | CLV88_1193 | Not Available | Negative | 4076830 - 4078464 | 58654.7 |
| stress responsive alpha/beta barrel protein | CLV88_1194 | Not Available | Negative | 4078508 - 4078819 | 11345.5 |
| hypothetical protein | CLV88_1195 | Not Available | Negative | 4079624 - 4080010 | 13908.9 |
| dna invertase pin-like site-specific dna recombinase | CLV88_1196 | Not Available | Positive | 4080102 - 4081676 | 59151.2 |
| parb family chromosome partitioning protein | CLV88_1197 | Not Available | Positive | 4081676 - 4082566 | 33341.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
