Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme-degrading monooxygenase hmoa | CLV88_11895 | Not Available | Positive | 4065364 - 4065699 | 12561.8 |
| transglycosylase-like protein with slt domain | CLV88_11896 | Not Available | Negative | 4065832 - 4066416 | 21186.7 |
| single-strand binding protein | CLV88_11897 | Not Available | Positive | 4066635 - 4067183 | 19083.8 |
| peptidase t | CLV88_11898 | Not Available | Positive | 4067199 - 4068443 | 44349.1 |
| 3-dehydroquinate synthase | CLV88_11899 | Not Available | Negative | 4068501 - 4069625 | 39933.4 |
| shikimate kinase | CLV88_118100 | Not Available | Negative | 4069628 - 4070173 | 20371.7 |
| hypothetical protein | CLV88_118101 | Not Available | Positive | 4070308 - 4070457 | 5196.52 |
| hypothetical protein | CLV88_118102 | Not Available | Positive | 4070447 - 4071961 | 53242.6 |
| integrase/recombinase xerd | CLV88_118103 | Not Available | Positive | 4071964 - 4072932 | 35939.9 |
| calcineurin-like phosphoesterase family protein | CLV88_118104 | Not Available | Negative | 4072869 - 4073690 | 28753.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
