Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | CLV88_11885 | Not Available | Positive | 4053577 - 4055028 | 52665.1 |
| peptide/nickel transport system atp-binding protein | CLV88_11886 | Not Available | Positive | 4055133 - 4057220 | 76513.8 |
| hypothetical protein | CLV88_11887 | Not Available | Negative | 4057387 - 4057521 | 5029.95 |
| hypothetical protein | CLV88_11888 | Not Available | Negative | 4057473 - 4057751 | 9786.58 |
| kynurenine formamidase | CLV88_11889 | Not Available | Positive | 4058130 - 4058951 | 28694.8 |
| tripartite atp-independent transporter dctm subunit | CLV88_11890 | Not Available | Negative | 4058992 - 4060392 | 49451.3 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11891 | Not Available | Negative | 4060404 - 4061036 | 22941.3 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_11892 | Not Available | Negative | 4061117 - 4062127 | 35899.4 |
| two-component system c4-dicarboxylate transport response regulator dctd | CLV88_11893 | Not Available | Negative | 4062250 - 4063536 | 46327.9 |
| two-component system c4-dicarboxylate transport sensor histidine kinase dctb | CLV88_11894 | Not Available | Negative | 4063533 - 4065260 | 61629.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
