Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf1153 | CLV88_11865 | Not Available | Negative | 4035538 - 4035843 | 11074.2 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | CLV88_11866 | Not Available | Positive | 4035964 - 4037109 | 41466.0 |
| putative zinc ribbon protein | CLV88_11867 | Not Available | Positive | 4037212 - 4037466 | 9582.54 |
| cadmium resistance protein cadd (predicted permease) | CLV88_11868 | Not Available | Negative | 4037463 - 4038047 | 19768.6 |
| lipid-a-disaccharide synthase | CLV88_11869 | Not Available | Negative | 4038051 - 4039208 | 41381.7 |
| hypothetical protein | CLV88_11870 | Not Available | Negative | 4039208 - 4040008 | 27426.5 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | CLV88_11871 | Not Available | Negative | 4040012 - 4040794 | 27516.2 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase | CLV88_11872 | Not Available | Negative | 4040797 - 4041264 | 17212.0 |
| periplasmic chaperone for outer membrane proteins skp | CLV88_11873 | Not Available | Negative | 4041336 - 4041899 | 20875.9 |
| beta-barrel assembly machine subunit bama | CLV88_11874 | Not Available | Negative | 4041906 - 4044266 | 87115.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
