Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine o-succinyltransferase | CLV88_11845 | Not Available | Positive | 4016921 - 4017844 | 35301.9 |
| polyphosphate kinase 2 | CLV88_11846 | Not Available | Positive | 4017928 - 4018797 | 33420.5 |
| tetr family transcriptional regulator | CLV88_11847 | Not Available | Positive | 4018790 - 4019407 | 22241.5 |
| esterase/lipase superfamily enzyme | CLV88_11848 | Not Available | Positive | 4019404 - 4020660 | 46607.8 |
| class 3 adenylate cyclase | CLV88_11849 | Not Available | Negative | 4020665 - 4021720 | 39316.5 |
| hemoglobin | CLV88_11850 | Not Available | Negative | 4021717 - 4022085 | 13223.7 |
| ssu ribosomal protein s9p | CLV88_11851 | Not Available | Negative | 4022222 - 4022707 | 17586.2 |
| lsu ribosomal protein l13p | CLV88_11852 | Not Available | Negative | 4022711 - 4023169 | 17059.7 |
| tellurite resistance protein | CLV88_11853 | Not Available | Negative | 4023335 - 4024315 | 35186.3 |
| uncharacterized protein (tigr00369 family) | CLV88_11854 | Not Available | Negative | 4024380 - 4024802 | 15499.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
