Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11835 | Not Available | Positive | 4004609 - 4004902 | 11148.9 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_11836 | Not Available | Negative | 4004906 - 4006450 | 55557.3 |
| gmp synthase (glutamine-hydrolysing) | CLV88_11837 | Not Available | Positive | 4006654 - 4008213 | 57416.3 |
| hypothetical protein | CLV88_11838 | Not Available | Positive | 4008536 - 4010608 | 76120.6 |
| fkbm family methyltransferase | CLV88_11839 | Not Available | Positive | 4010809 - 4011564 | 27105.1 |
| methyltransferase family protein | CLV88_11840 | Not Available | Negative | 4011652 - 4012437 | 28595.1 |
| putative membrane protein | CLV88_11841 | Not Available | Positive | 4012721 - 4013593 | 30881.6 |
| long-subunit fatty acid transport protein | CLV88_11842 | Not Available | Positive | 4013718 - 4014839 | 39444.7 |
| eama domain-containing membrane protein rard | CLV88_11843 | Not Available | Positive | 4014943 - 4015845 | 31647.8 |
| hypothetical protein | CLV88_11844 | Not Available | Positive | 4016008 - 4016877 | 32547.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
