Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coenzyme q-binding protein coq10 | CLV88_11825 | Not Available | Negative | 3997845 - 3998288 | 16887.4 |
| hypoxanthine phosphoribosyltransferase | CLV88_11826 | Not Available | Positive | 3998382 - 3998921 | 20214.3 |
| hypothetical protein | CLV88_11827 | Not Available | Positive | 3998987 - 3999097 | 4076.18 |
| dna-binding transcriptional lysr family regulator | CLV88_11828 | Not Available | Negative | 3999090 - 3999956 | 30406.5 |
| cytochrome c556 | CLV88_11829 | Not Available | Positive | 4000048 - 4000512 | 15338.3 |
| mono/diheme cytochrome c family protein | CLV88_11830 | Not Available | Positive | 4000587 - 4001465 | 31496.8 |
| lipoic acid synthetase | CLV88_11831 | Not Available | Negative | 4001515 - 4002465 | 35232.3 |
| hypothetical protein | CLV88_11832 | Not Available | Negative | 4002481 - 4002630 | 5462.88 |
| peroxiredoxin | CLV88_11833 | Not Available | Positive | 4002672 - 4003220 | 20268.8 |
| hypothetical protein | CLV88_11834 | Not Available | Negative | 4003298 - 4004365 | 39105.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
