Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system nitrogen regulation response regulator ntrx | CLV88_11815 | Not Available | Negative | 3985538 - 3986962 | 52319.4 |
| two-component system nitrogen regulation sensor histidine kinase ntry | CLV88_11816 | Not Available | Negative | 3986959 - 3989226 | 83634.5 |
| two-component system nitrogen regulation response regulator glng | CLV88_11817 | Not Available | Negative | 3989326 - 3990690 | 50137.6 |
| two-component system nitrogen regulation sensor histidine kinase glnl | CLV88_11818 | Not Available | Negative | 3990690 - 3991775 | 38948.7 |
| pp_03872 | CLV88_11819 | Not Available | Negative | 3991772 - 3992773 | Not Available |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | CLV88_11820 | Not Available | Positive | 3993037 - 3994182 | 40005.6 |
| phosphatidylglycerophosphatase a | CLV88_11821 | Not Available | Positive | 3994179 - 3994661 | 17817.0 |
| nicotinamide-nucleotide amidase | CLV88_11822 | Not Available | Positive | 3994661 - 3995149 | 16557.7 |
| ammonium transporter | CLV88_11823 | Not Available | Positive | 3995310 - 3996497 | 41092.9 |
| 2-methylcitrate dehydratase prpd | CLV88_11824 | Not Available | Negative | 3996535 - 3997824 | 44741.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
