Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts system mannose-specific iia component | CLV88_117102 | Not Available | Positive | 3965888 - 3966280 | 13928.9 |
| phosphocarrier protein | CLV88_117103 | Not Available | Positive | 3966286 - 3966564 | 9325.04 |
| putative hemolysin | CLV88_117104 | Not Available | Positive | 3966595 - 3967494 | 33566.6 |
| 3-hydroxyacyl-coa dehydrogenase | CLV88_117105 | Not Available | Negative | 3967552 - 3968427 | 31850.4 |
| hypothetical protein | CLV88_117106 | Not Available | Positive | 3968588 - 3969451 | 31916.9 |
| hypothetical protein | CLV88_117107 | Not Available | Negative | 3969472 - 3969585 | 4090.96 |
| transcription-repair coupling factor | CLV88_1181 | Not Available | Negative | 3969824 - 3973303 | 127946.0 |
| hypothetical protein | CLV88_1182 | Not Available | Negative | 3973320 - 3973874 | 21176.3 |
| porphobilinogen synthase | CLV88_1183 | Not Available | Positive | 3973960 - 3974961 | 36267.4 |
| lipid-binding sylf domain-containing protein | CLV88_1184 | Not Available | Positive | 3975080 - 3975640 | 19373.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
