Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf2484 | CLV88_101357 | Not Available | Negative | 361800 - 362057 | 9568.26 |
| udp-n-acetylmuramate--l-alanine ligase | CLV88_101358 | Not Available | Negative | 362121 - 363527 | 49879.6 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | CLV88_101359 | Not Available | Negative | 363532 - 364578 | 36671.3 |
| cell division protein ftsw | CLV88_101360 | Not Available | Negative | 364626 - 365792 | 42253.7 |
| hypothetical protein | CLV88_101361 | Not Available | Negative | 366003 - 366275 | 9832.8 |
| hypothetical protein | CLV88_101362 | Not Available | Negative | 366272 - 366550 | 10630.5 |
| hypothetical protein | CLV88_101363 | Not Available | Negative | 366547 - 366810 | 9391.38 |
| uncharacterized protein upf0029 | CLV88_101364 | Not Available | Negative | 366886 - 367239 | 12951.7 |
| peptidase m48-like protein | CLV88_101365 | Not Available | Negative | 367244 - 367951 | 25266.0 |
| hypothetical protein | CLV88_101366 | Not Available | Positive | 368052 - 368291 | 8773.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
