Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | CLV88_11792 | Not Available | Positive | 3953399 - 3954574 | 41646.8 |
| agmatinase | CLV88_11793 | Not Available | Negative | 3954613 - 3955458 | 29996.6 |
| carboxynorspermidine decarboxylase | CLV88_11794 | Not Available | Negative | 3955455 - 3956624 | 42586.7 |
| carboxynorspermidine dehydrogenase | CLV88_11795 | Not Available | Negative | 3956742 - 3957953 | 44653.2 |
| arginine decarboxylase | CLV88_11796 | Not Available | Negative | 3957976 - 3959865 | 69625.6 |
| phosphoenolpyruvate carboxykinase (atp) | CLV88_11797 | Not Available | Negative | 3960095 - 3961693 | 58466.9 |
| winged helix family two component transcriptional regulator | CLV88_11798 | Not Available | Positive | 3962069 - 3962770 | 26754.2 |
| two-component system sensor histidine kinase chvg | CLV88_11799 | Not Available | Positive | 3962794 - 3964491 | 61324.3 |
| hpr(ser) kinase/phosphatase | CLV88_117100 | Not Available | Positive | 3964522 - 3964962 | 15779.2 |
| upf0042 nucleotide-binding protein | CLV88_117101 | Not Available | Positive | 3964968 - 3965891 | 34475.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
