Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | CLV88_11782 | Not Available | Negative | 3946593 - 3947306 | 25948.0 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phng | CLV88_11783 | Not Available | Positive | 3947408 - 3947854 | 16201.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnh | CLV88_11784 | Not Available | Positive | 3947851 - 3948420 | 19835.1 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | CLV88_11785 | Not Available | Positive | 3948420 - 3949550 | 41481.9 |
| hypothetical protein | CLV88_11786 | Not Available | Positive | 3949547 - 3949741 | 7048.56 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | CLV88_11787 | Not Available | Positive | 3949729 - 3950640 | 33659.8 |
| putative phosphonate transport system atp-binding protein | CLV88_11788 | Not Available | Positive | 3950637 - 3951407 | 27987.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | CLV88_11789 | Not Available | Positive | 3951485 - 3952165 | 24652.9 |
| ribose 1,5-bisphosphokinase | CLV88_11790 | Not Available | Positive | 3952165 - 3952713 | 19592.6 |
| uncharacterized protein duf1045 | CLV88_11791 | Not Available | Negative | 3952689 - 3953375 | 25033.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
