Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homodimeric glycerol 3-phosphate dehydrogenase (quinone) | CLV88_11772 | Not Available | Positive | 3936862 - 3938439 | 57936.2 |
| glycerol kinase | CLV88_11773 | Not Available | Positive | 3938526 - 3940013 | 53865.9 |
| Trna-met | Not Available | Not Available | Positive | 3940098 - 3940174 | Not Available |
| hypothetical protein | CLV88_11775 | Not Available | Negative | 3940191 - 3940334 | 5340.4 |
| phosphonate transport system atp-binding protein | CLV88_11776 | Not Available | Positive | 3940431 - 3941225 | 29033.0 |
| phosphonate transport system substrate-binding protein | CLV88_11777 | Not Available | Positive | 3941277 - 3942179 | 31959.9 |
| phosphonate transport system permease protein | CLV88_11778 | Not Available | Positive | 3942251 - 3943123 | 31584.5 |
| phosphonate transport system permease protein | CLV88_11779 | Not Available | Positive | 3943120 - 3944442 | 49077.3 |
| hypothetical protein | CLV88_11780 | Not Available | Negative | 3944569 - 3944976 | 14772.6 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | CLV88_11781 | Not Available | Negative | 3945323 - 3946504 | 42768.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
