Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | CLV88_11762 | Not Available | Positive | 3925711 - 3926865 | 42711.0 |
| peptide/nickel transport system atp-binding protein | CLV88_11763 | Not Available | Positive | 3926862 - 3927860 | 35901.7 |
| peptide/nickel transport system atp-binding protein/oligopeptide transport system atp-binding protein | CLV88_11764 | Not Available | Positive | 3927857 - 3928858 | 36623.9 |
| 2-polyprenyl-6-methoxyphenol hydroxylase-like fad-dependent oxidoreductase | CLV88_11765 | Not Available | Negative | 3928855 - 3930138 | 45784.7 |
| molybdate transport system substrate-binding protein | CLV88_11766 | Not Available | Positive | 3930216 - 3930992 | 26709.1 |
| molybdate transport system permease protein | CLV88_11767 | Not Available | Positive | 3930989 - 3931684 | 24246.4 |
| molybdate transport system atp-binding protein | CLV88_11768 | Not Available | Positive | 3931681 - 3932766 | 38226.5 |
| uncharacterized protein | CLV88_11769 | Not Available | Positive | 3932886 - 3935219 | 82815.4 |
| 3-dehydroquinate dehydratase | CLV88_11770 | Not Available | Negative | 3935256 - 3935696 | 15993.0 |
| deor family transcriptional regulator | CLV88_11771 | Not Available | Negative | 3935810 - 3936577 | 27329.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
