Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11752 | Not Available | Positive | 3912288 - 3912833 | 19668.6 |
| tripartite atp-independent transporter dctm subunit | CLV88_11753 | Not Available | Positive | 3912830 - 3914137 | 46269.5 |
| hydroxyquinol 1,2-dioxygenase | CLV88_11754 | Not Available | Positive | 3914147 - 3915019 | 31981.3 |
| alcohol dehydrogenase class iv | CLV88_11755 | Not Available | Negative | 3915039 - 3916184 | 39831.6 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | CLV88_11756 | Not Available | Negative | 3916184 - 3917566 | 49502.1 |
| glutamine synthetase | CLV88_11757 | Not Available | Negative | 3917673 - 3919034 | 51041.6 |
| arylsulfatase a-like enzyme | CLV88_11758 | Not Available | Positive | 3919340 - 3920881 | 57971.7 |
| deor family transcriptional regulator | CLV88_11759 | Not Available | Negative | 3920888 - 3921667 | 27397.6 |
| peptide/nickel transport system substrate-binding protein | CLV88_11760 | Not Available | Positive | 3922546 - 3924585 | 74991.7 |
| peptide/nickel transport system permease protein | CLV88_11761 | Not Available | Positive | 3924703 - 3925707 | 36727.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
