Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase | CLV88_11742 | Not Available | Positive | 3902525 - 3904189 | 61670.7 |
| hypothetical protein | CLV88_11743 | Not Available | Positive | 3904204 - 3905019 | 28962.4 |
| methanogen homocitrate synthase | CLV88_11744 | Not Available | Negative | 3905080 - 3906294 | 44636.8 |
| gntr family transcriptional regulator | CLV88_11745 | Not Available | Positive | 3906652 - 3907314 | 25024.7 |
| tetrachloro-p-hydroquinone reductive dehalogenase | CLV88_11746 | Not Available | Positive | 3907333 - 3908151 | 29928.6 |
| malonyl-coa decarboxylase | CLV88_11747 | Not Available | Negative | 3908140 - 3909393 | 46308.2 |
| hypothetical protein | CLV88_11748 | Not Available | Negative | 3909406 - 3909792 | 13712.5 |
| 3-hydroxypropanoate dehydrogenase | CLV88_11749 | Not Available | Positive | 3910001 - 3910666 | 24987.7 |
| putative osmc-like protein | CLV88_11750 | Not Available | Positive | 3910674 - 3911129 | 16036.2 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_11751 | Not Available | Positive | 3911168 - 3912250 | 38128.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
