Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate/tricarballylate utilization protein | CLV88_11732 | Not Available | Positive | 3889437 - 3890504 | 38618.2 |
| laci family transcriptional regulator | CLV88_11733 | Not Available | Negative | 3890636 - 3891694 | 39124.0 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_11734 | Not Available | Positive | 3891879 - 3893105 | 43070.6 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_11735 | Not Available | Positive | 3893178 - 3894071 | 33110.4 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_11736 | Not Available | Positive | 3894064 - 3894969 | 33205.4 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_11737 | Not Available | Positive | 3894976 - 3896055 | 39166.6 |
| sugar phosphate isomerase/epimerase | CLV88_11738 | Not Available | Positive | 3896124 - 3896864 | 27226.2 |
| putative dehydrogenase | CLV88_11739 | Not Available | Positive | 3896877 - 3898010 | 40458.2 |
| aconitase | CLV88_11740 | Not Available | Negative | 3898087 - 3900879 | 100433.0 |
| uncharacterized protein duf3179 | CLV88_11741 | Not Available | Positive | 3901227 - 3902477 | 46855.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
