Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage integrase family protein | CLV88_11722 | Not Available | Negative | 3880780 - 3881373 | 21793.0 |
| hypothetical protein | CLV88_11723 | Not Available | Negative | 3881506 - 3881805 | 11546.8 |
| hypothetical protein | CLV88_11724 | Not Available | Negative | 3882289 - 3882543 | 9729.41 |
| dde family transposase | CLV88_11725 | Not Available | Positive | 3883017 - 3883655 | 23271.2 |
| hypothetical protein | CLV88_11726 | Not Available | Negative | 3884429 - 3884821 | 14741.0 |
| sulfatase-like protein | CLV88_11727 | Not Available | Positive | 3885231 - 3885560 | 11700.2 |
| arylsulfatase-like protein | CLV88_11728 | Not Available | Positive | 3885506 - 3886585 | 40265.4 |
| hypothetical protein | CLV88_11729 | Not Available | Positive | 3886622 - 3886822 | 7500.02 |
| dna-binding transcriptional lysr family regulator | CLV88_11730 | Not Available | Negative | 3887090 - 3887983 | 31904.7 |
| tricarballylate dehydrogenase | CLV88_11731 | Not Available | Positive | 3888065 - 3889447 | 49710.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
