Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative mfs family arabinose efflux permease | CLV88_11712 | Not Available | Negative | 3869697 - 3871019 | 47742.0 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | CLV88_11713 | Not Available | Negative | 3871060 - 3872022 | 34838.7 |
| arac family transcriptional regulator | CLV88_11714 | Not Available | Positive | 3872194 - 3873048 | 31317.2 |
| threonine/homoserine/homoserine lactone efflux protein | CLV88_11715 | Not Available | Negative | 3873018 - 3873620 | 21542.8 |
| Trna-arg | Not Available | Not Available | Positive | 3873940 - 3874016 | Not Available |
| hypothetical protein | CLV88_11717 | Not Available | Positive | 3874213 - 3874701 | 18413.2 |
| arylsulfatase a-like enzyme | CLV88_11718 | Not Available | Negative | 3874906 - 3876477 | 58693.8 |
| trap transporter 4tm/12tm fusion protein | CLV88_11719 | Not Available | Negative | 3876474 - 3878390 | 67421.8 |
| hypothetical protein | CLV88_11720 | Not Available | Negative | 3878460 - 3879467 | 35598.5 |
| lysr family pca operon transcriptional activator | CLV88_11721 | Not Available | Positive | 3879557 - 3880468 | 33215.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
