Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-barrel assembly machine subunit bamd | CLV88_101347 | Not Available | Negative | 351148 - 352002 | 32217.1 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | CLV88_101348 | Not Available | Negative | 352109 - 352963 | 30347.6 |
| cell division protein ftsz | CLV88_101349 | Not Available | Negative | 353243 - 354874 | 57281.6 |
| hypothetical protein | CLV88_101350 | Not Available | Negative | 355219 - 355629 | 15248.1 |
| cell division protein ftsa | CLV88_101351 | Not Available | Negative | 355635 - 356969 | 48406.2 |
| cell division protein ftsq | CLV88_101352 | Not Available | Negative | 356969 - 357841 | 32573.7 |
| d-alanine--d-alanine ligase | CLV88_101353 | Not Available | Negative | 357829 - 358743 | 32759.0 |
| udp-n-acetylmuramate dehydrogenase | CLV88_101354 | Not Available | Negative | 358827 - 359765 | 33611.1 |
| hypothetical protein | CLV88_101355 | Not Available | Negative | 359847 - 361508 | 60775.9 |
| uncharacterized protein duf2484 | CLV88_101356 | Not Available | Negative | 361558 - 361803 | 9351.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
