Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cellulose biosynthesis protein bcsq | CLV88_11640 | Not Available | Negative | 3814915 - 3816300 | 52012.7 |
| plasmid replication initiation protein | CLV88_11641 | Not Available | Positive | 3816697 - 3817701 | 37956.0 |
| uncharacterized protein duf2493 | CLV88_11642 | Not Available | Positive | 3818115 - 3818285 | 6252.34 |
| hypothetical protein | CLV88_11643 | Not Available | Positive | 3818500 - 3819516 | 37047.3 |
| hypothetical protein | CLV88_11644 | Not Available | Negative | 3819494 - 3819697 | 7178.69 |
| hypothetical protein | CLV88_11645 | Not Available | Negative | 3819754 - 3819954 | 7062.18 |
| hypothetical protein | CLV88_11646 | Not Available | Positive | 3820015 - 3820194 | 6350.19 |
| transposase | CLV88_11647 | Not Available | Positive | 3820391 - 3821443 | 38249.6 |
| integrase-like protein | CLV88_11648 | Not Available | Positive | 3821466 - 3821660 | 7697.39 |
| hypothetical protein | CLV88_11649 | Not Available | Negative | 3821740 - 3821961 | 8449.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
