Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11630 | Not Available | Negative | 3805437 - 3806546 | 41000.5 |
| plasmid stabilization system protein pare | CLV88_11631 | Not Available | Negative | 3806715 - 3807074 | 13906.6 |
| antitoxin pard1/3/4 | CLV88_11632 | Not Available | Negative | 3807058 - 3807333 | 9921.68 |
| site-specific recombinase xerd | CLV88_11633 | Not Available | Positive | 3807391 - 3808464 | 39483.7 |
| lipopolysaccharide/colanic/teichoic acid biosynthesis glycosyltransferase | CLV88_11634 | Not Available | Negative | 3808551 - 3809162 | 23584.3 |
| nucleoside-diphosphate-sugar epimerase | CLV88_11635 | Not Available | Negative | 3809155 - 3810045 | 31916.7 |
| putative transposase | CLV88_11636 | Not Available | Negative | 3810239 - 3810466 | 8666.32 |
| hypothetical protein | CLV88_11637 | Not Available | Negative | 3810772 - 3810990 | 7584.18 |
| ca2+-binding rtx toxin-like protein | CLV88_11638 | Not Available | Positive | 3811083 - 3813326 | 76700.1 |
| parb-like nuclease family protein | CLV88_11639 | Not Available | Negative | 3813804 - 3814835 | 38187.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
