Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps sulfotransferase nodh | CLV88_11610 | Not Available | Positive | 3768595 - 3769332 | 28579.4 |
| udp-galactopyranose mutase | CLV88_11611 | Not Available | Positive | 3769364 - 3770521 | 44373.3 |
| d-alanine-d-alanine ligase-like atp-grasp enzyme | CLV88_11612 | Not Available | Positive | 3770607 - 3772526 | 69913.3 |
| hypothetical protein | CLV88_11613 | Not Available | Negative | 3772554 - 3773090 | 19141.4 |
| hemolysin type calcium-binding protein | CLV88_11614 | Not Available | Negative | 3773166 - 3775355 | 73462.0 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_11615 | Not Available | Positive | 3775775 - 3777118 | 49960.1 |
| hypothetical protein | CLV88_11616 | Not Available | Negative | 3777465 - 3777707 | 8868.39 |
| sapc protein | CLV88_11617 | Not Available | Negative | 3777811 - 3778641 | 31684.3 |
| sulfotransferase family protein | CLV88_11618 | Not Available | Negative | 3778646 - 3780343 | 65219.2 |
| hypothetical protein | CLV88_11619 | Not Available | Negative | 3780454 - 3792678 | 423730.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
