Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_115108 | Not Available | Negative | 3752746 - 3752946 | 7344.64 |
| gt2 family glycosyltransferase | CLV88_1161 | Not Available | Negative | 3753385 - 3754347 | 36606.9 |
| integrase-like protein | CLV88_1162 | Not Available | Negative | 3754741 - 3755157 | 15404.4 |
| flaa1/epsc-like ndp-sugar epimerase | CLV88_1163 | Not Available | Positive | 3755867 - 3757783 | 69251.9 |
| atp-binding cassette subfamily c protein | CLV88_1164 | Not Available | Positive | 3758010 - 3759995 | 71506.4 |
| hlyd family secretion protein | CLV88_1165 | Not Available | Positive | 3759992 - 3761296 | 48495.4 |
| udp-sulfoquinovose synthase | CLV88_1166 | Not Available | Negative | 3761543 - 3762703 | 43419.7 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_1167 | Not Available | Negative | 3762799 - 3765318 | 94537.8 |
| udp-glucose 4-epimerase | CLV88_1168 | Not Available | Positive | 3765524 - 3766489 | 35270.0 |
| lipopolysaccharide biosynthesis glycosyltransferase | CLV88_1169 | Not Available | Positive | 3766786 - 3768504 | 66464.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
