Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transaldolase | CLV88_11598 | Not Available | Negative | 3739797 - 3740450 | 23188.9 |
| transketolase | CLV88_11599 | Not Available | Negative | 3740482 - 3742476 | 70281.4 |
| phosphoribulokinase/uridine kinase family protein | CLV88_115100 | Not Available | Negative | 3742500 - 3743183 | 25361.1 |
| mannose abc transporter atp-binding protein /fructose abc transporter atp-binding protein /ribose abc transporter atp-binding protein | CLV88_115101 | Not Available | Negative | 3743180 - 3743989 | 29132.7 |
| mannose abc transporter membrane protein /fructose abc transporter membrane protein /ribose abc transporter membrane protein | CLV88_115102 | Not Available | Negative | 3743965 - 3745035 | 37639.7 |
| ribose-binding protein | CLV88_115103 | Not Available | Negative | 3745152 - 3746168 | 34629.8 |
| marr family transcriptional regulator | CLV88_115104 | Not Available | Positive | 3746326 - 3747684 | 49735.3 |
| rhamnose transport system atp-binding protein | CLV88_115105 | Not Available | Positive | 3748010 - 3750583 | 90611.7 |
| rhamnose transport system permease protein | CLV88_115106 | Not Available | Positive | 3750580 - 3751563 | 34164.0 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_115107 | Not Available | Positive | 3751612 - 3752607 | 34818.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
