Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11588 | Not Available | Negative | 3730203 - 3730646 | 16552.7 |
| caax prenyl protease-like protein | CLV88_11589 | Not Available | Negative | 3730831 - 3731586 | 26441.4 |
| beta-lactamase | CLV88_11590 | Not Available | Negative | 3731686 - 3732435 | 26579.4 |
| beta-lactamase | CLV88_11591 | Not Available | Negative | 3732442 - 3732867 | 15536.8 |
| peptidase s41-like protein | CLV88_11592 | Not Available | Negative | 3732864 - 3733991 | 40571.4 |
| uncharacterized protein duf4260 | CLV88_11593 | Not Available | Negative | 3733988 - 3734386 | 14383.6 |
| hypothetical protein | CLV88_11594 | Not Available | Negative | 3734470 - 3735009 | 18998.1 |
| arac family transcriptional regulator | CLV88_11595 | Not Available | Negative | 3735093 - 3736160 | 38546.8 |
| dna invertase pin-like site-specific dna recombinase | CLV88_11596 | Not Available | Positive | 3736864 - 3737541 | 25257.8 |
| putative nbd/hsp70 family sugar kinase | CLV88_11597 | Not Available | Negative | 3738547 - 3739563 | 36014.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
