Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-hydroxyisobutyrate dehydrogenase | CLV88_11578 | Not Available | Negative | 3719686 - 3720564 | 30501.9 |
| uncharacterized protein glcg (duf336 family) | CLV88_11579 | Not Available | Negative | 3720584 - 3721009 | 14098.0 |
| tripartite atp-independent transporter dctm subunit | CLV88_11580 | Not Available | Negative | 3721029 - 3722315 | 44881.4 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11581 | Not Available | Negative | 3722318 - 3722851 | 19893.8 |
| tripartite atp-independent transporter dctp family solute receptor | CLV88_11582 | Not Available | Negative | 3722925 - 3723899 | 34353.9 |
| gntr family transcriptional regulator | CLV88_11583 | Not Available | Positive | 3724221 - 3724889 | 25362.3 |
| glucuronate isomerase | CLV88_11584 | Not Available | Positive | 3725163 - 3726569 | 52746.2 |
| fructuronate reductase | CLV88_11585 | Not Available | Positive | 3726566 - 3727993 | 51992.1 |
| hypothetical protein | CLV88_11586 | Not Available | Negative | 3728218 - 3728655 | 15872.7 |
| gluconolactonase | CLV88_11587 | Not Available | Positive | 3729064 - 3730032 | 35296.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
