Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cardiolipin synthase | CLV88_11568 | Not Available | Negative | 3711421 - 3712830 | 52124.9 |
| small-conductance mechanosensitive channel | CLV88_11569 | Not Available | Positive | 3713112 - 3714212 | 39939.6 |
| hypothetical protein | CLV88_11570 | Not Available | Negative | 3714227 - 3714688 | 15949.8 |
| hypothetical protein | CLV88_11571 | Not Available | Negative | 3714698 - 3714967 | 10015.9 |
| hypothetical protein | CLV88_11572 | Not Available | Positive | 3715379 - 3716098 | 26402.0 |
| phage integrase family protein | CLV88_11573 | Not Available | Positive | 3716117 - 3716623 | 19516.3 |
| phage integrase family protein | CLV88_11574 | Not Available | Positive | 3716616 - 3717677 | 40381.5 |
| hypothetical protein | CLV88_11575 | Not Available | Positive | 3718157 - 3718303 | 5035.31 |
| dna photolyase-like fad binding protein | CLV88_11576 | Not Available | Positive | 3718370 - 3719197 | 30857.6 |
| putative transposase | CLV88_11577 | Not Available | Negative | 3719194 - 3719460 | 10218.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
