Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac-like dna-binding protein | CLV88_11558 | Not Available | Negative | 3701273 - 3702283 | 37318.2 |
| arylsulfatase | CLV88_11559 | Not Available | Positive | 3702583 - 3704160 | 58947.4 |
| putative membrane protein | CLV88_11560 | Not Available | Positive | 3704308 - 3704817 | 17498.8 |
| prc-barrel domain protein | CLV88_11561 | Not Available | Positive | 3704958 - 3705311 | 12466.7 |
| uncharacterized membrane protein hded (duf308 family) | CLV88_11562 | Not Available | Positive | 3705418 - 3705972 | 19401.6 |
| type i phosphodiesterase/nucleotide pyrophosphatase | CLV88_11563 | Not Available | Positive | 3706030 - 3707748 | 62627.2 |
| hypothetical protein | CLV88_11564 | Not Available | Positive | 3707745 - 3708530 | 28366.5 |
| putative membrane protein | CLV88_11565 | Not Available | Positive | 3708609 - 3709466 | 30153.9 |
| hypothetical protein | CLV88_11566 | Not Available | Positive | 3709575 - 3709814 | 9023.64 |
| putative purr-regulated permease perm | CLV88_11567 | Not Available | Positive | 3709907 - 3711367 | 51659.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
