Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_11548 | Not Available | Positive | 3689922 - 3690443 | 19336.1 |
| pas/pac sensor hybrid histidine kinase | CLV88_11549 | Not Available | Positive | 3690492 - 3693080 | 94437.1 |
| acetyl-coa acetyltransferase | CLV88_11550 | Not Available | Positive | 3693189 - 3694373 | 41751.6 |
| acyl dehydratase | CLV88_11551 | Not Available | Positive | 3694373 - 3694843 | 16787.3 |
| acyl dehydratase | CLV88_11552 | Not Available | Positive | 3694840 - 3695259 | 14659.5 |
| hypothetical protein | CLV88_11553 | Not Available | Positive | 3695272 - 3696420 | 42238.7 |
| crotonobetainyl-coa:carnitine coa-transferase caib-like acyl-coa transferase | CLV88_11554 | Not Available | Positive | 3696446 - 3697543 | 39330.1 |
| putative purr-regulated permease perm | CLV88_11555 | Not Available | Negative | 3698065 - 3699252 | 43000.3 |
| lipid kinase yegs | CLV88_11556 | Not Available | Positive | 3699456 - 3700349 | 31560.1 |
| membrane protein | CLV88_11557 | Not Available | Positive | 3700355 - 3701200 | 30558.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
