Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein f (gspf) | CLV88_1158 | Not Available | Positive | 3651602 - 3652570 | 35447.1 |
| tight adherence protein c | CLV88_1159 | Not Available | Positive | 3652583 - 3653554 | 35348.6 |
| tetratricopeptide repeat protein | CLV88_11510 | Not Available | Positive | 3653736 - 3654143 | 15031.5 |
| tetratricopeptide repeat protein | CLV88_11511 | Not Available | Positive | 3654174 - 3655022 | 31495.9 |
| prepilin peptidase cpaa | CLV88_11512 | Not Available | Positive | 3655038 - 3655532 | 17760.4 |
| hypothetical protein | CLV88_11513 | Not Available | Negative | 3655491 - 3655589 | 3512.11 |
| hypothetical protein | CLV88_11514 | Not Available | Positive | 3655632 - 3656939 | 49079.5 |
| fmn adenylyltransferase /riboflavin kinase | CLV88_11515 | Not Available | Positive | 3657186 - 3658118 | 33472.9 |
| hypothetical protein | CLV88_11516 | Not Available | Positive | 3658091 - 3658600 | 19558.1 |
| l-threonine aldolase | CLV88_11517 | Not Available | Positive | 3658600 - 3659652 | 37727.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
