Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | CLV88_114122 | Not Available | Negative | 3642218 - 3643279 | 40194.0 |
| excisionase family dna binding protein | CLV88_114123 | Not Available | Negative | 3643257 - 3643763 | 18807.8 |
| helix-turn-helix protein | CLV88_114124 | Not Available | Negative | 3643763 - 3643966 | 7691.23 |
| hypothetical protein | CLV88_1151 | Not Available | Positive | 3644668 - 3644871 | 6840.03 |
| hypothetical protein | CLV88_1152 | Not Available | Positive | 3645050 - 3645229 | 6159.27 |
| pilus assembly protein cpab | CLV88_1153 | Not Available | Positive | 3645381 - 3646235 | 30899.2 |
| pilus assembly protein cpac | CLV88_1154 | Not Available | Positive | 3646435 - 3647838 | 49562.4 |
| outer membrane protein ompa-like peptidoglycan-associated protein | CLV88_1155 | Not Available | Positive | 3647850 - 3648506 | 24247.5 |
| pilus assembly protein cpae | CLV88_1156 | Not Available | Positive | 3648853 - 3650109 | 45835.3 |
| pilus assembly protein cpaf | CLV88_1157 | Not Available | Positive | 3650124 - 3651596 | 53972.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
