Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ca2+-binding rtx toxin-like protein | CLV88_114111 | Not Available | Negative | 3631806 - 3633743 | 68707.1 |
| glutathione s-transferase | CLV88_114112 | Not Available | Negative | 3634408 - 3635013 | 22034.3 |
| paib family negative transcriptional regulator | CLV88_114113 | Not Available | Negative | 3635020 - 3635706 | 25399.4 |
| 6,7-dimethyl-8-ribityllumazine synthase | CLV88_114115 | Not Available | Positive | 3635950 - 3636402 | 16337.5 |
| glutathione s-transferase | CLV88_114116 | Not Available | Negative | 3636414 - 3637088 | 25237.6 |
| threonylcarbamoyladenosine trna methylthiotransferase mtab | CLV88_114117 | Not Available | Negative | 3637204 - 3638463 | 46166.6 |
| diaminopimelate epimerase | CLV88_114118 | Not Available | Negative | 3638463 - 3639302 | 29802.3 |
| Trna-lys | Not Available | Not Available | Positive | 3639401 - 3639476 | Not Available |
| hypothetical protein | CLV88_114120 | Not Available | Positive | 3639584 - 3640390 | 30153.6 |
| queuosine biosynthesis protein quec | CLV88_114121 | Not Available | Positive | 3640365 - 3641855 | 55838.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
