Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101327 | Not Available | Positive | 329445 - 329873 | 16059.8 |
| hypothetical protein | CLV88_101328 | Not Available | Positive | 329983 - 331287 | 49323.3 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | CLV88_101329 | Not Available | Positive | 331374 - 332885 | 55586.0 |
| acyl-coa thioester hydrolase | CLV88_101330 | Not Available | Positive | 333321 - 333794 | 17678.8 |
| hypothetical protein | CLV88_101331 | Not Available | Positive | 333874 - 334515 | 22835.7 |
| dnaj-like protein | CLV88_101332 | Not Available | Positive | 334660 - 335283 | 23964.2 |
| class 3 adenylate cyclase | CLV88_101333 | Not Available | Positive | 335351 - 336907 | 57981.4 |
| arac family transcriptional regulator | CLV88_101334 | Not Available | Positive | 336986 - 338026 | 38745.3 |
| hypothetical protein | CLV88_101335 | Not Available | Positive | 338193 - 338405 | 8076.59 |
| two-component system response regulator chvi | CLV88_101336 | Not Available | Positive | 338423 - 339133 | 26809.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
