Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_114101 | Not Available | Negative | 3623183 - 3624445 | 47850.6 |
| gmp synthase-like glutamine amidotransferase | CLV88_114102 | Not Available | Positive | 3624539 - 3625243 | 25521.2 |
| gntr family transcriptional regulator | CLV88_114103 | Not Available | Negative | 3625353 - 3626003 | 23361.1 |
| 2,4-dihydroxyhept-2-enedioate aldolase | CLV88_114104 | Not Available | Negative | 3626036 - 3626815 | 27137.6 |
| 2-oxohept-3-enedioate hydratase | CLV88_114105 | Not Available | Negative | 3626826 - 3627623 | 28441.1 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase in catechol pathway | CLV88_114106 | Not Available | Negative | 3627620 - 3628471 | 31025.9 |
| catechol 2,3-dioxygenase | CLV88_114107 | Not Available | Negative | 3628517 - 3629497 | 37179.1 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | CLV88_114108 | Not Available | Negative | 3629520 - 3629897 | 13898.6 |
| lytic murein transglycosylase | CLV88_114109 | Not Available | Negative | 3630075 - 3631229 | 41284.4 |
| enamine deaminase rida (yjgf/yer057c/uk114 family) | CLV88_114110 | Not Available | Positive | 3631398 - 3631742 | 12377.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
