Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-aminobutyrate aminotransferase-like enzyme | CLV88_11491 | Not Available | Negative | 3612216 - 3613499 | 46474.4 |
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | CLV88_11492 | Not Available | Negative | 3613499 - 3614749 | 43676.4 |
| putative tricarboxylic transport membrane protein | CLV88_11493 | Not Available | Negative | 3614848 - 3616467 | 58288.3 |
| tripartite tricarboxylate transporter tctb family protein | CLV88_11494 | Not Available | Negative | 3616478 - 3617008 | 20596.2 |
| tripartite-type tricarboxylate transporter receptor subunit tctc | CLV88_11495 | Not Available | Negative | 3617076 - 3618017 | 32362.5 |
| iclr family transcriptional regulator | CLV88_11496 | Not Available | Positive | 3618175 - 3618963 | 29132.1 |
| hypothetical protein | CLV88_11497 | Not Available | Positive | 3618994 - 3620349 | 48641.0 |
| cytochrome c553 | CLV88_11498 | Not Available | Negative | 3620504 - 3621340 | 29209.5 |
| 2fe-2s ferredoxin | CLV88_11499 | Not Available | Negative | 3621487 - 3621801 | 11137.1 |
| glutamine synthetase | CLV88_114100 | Not Available | Negative | 3621879 - 3623168 | 47269.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
