Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna replication and repair protein reco | CLV88_11481 | Not Available | Positive | 3603317 - 3604045 | 26651.1 |
| heat shock protein hslj | CLV88_11482 | Not Available | Negative | 3604023 - 3604412 | 13895.4 |
| tetr family transcriptional regulator | CLV88_11483 | Not Available | Negative | 3604417 - 3604971 | 20006.6 |
| (2s)-methylsuccinyl-coa dehydrogenase | CLV88_11484 | Not Available | Negative | 3605264 - 3606952 | 61681.8 |
| hypothetical protein | CLV88_11485 | Not Available | Positive | 3607118 - 3607876 | 26702.7 |
| putative purr-regulated permease perm | CLV88_11486 | Not Available | Positive | 3607922 - 3609001 | 39416.2 |
| uncharacterized protein duf2478 | CLV88_11487 | Not Available | Negative | 3608998 - 3609507 | 18179.8 |
| ion channel | CLV88_11488 | Not Available | Negative | 3609539 - 3609982 | 16271.6 |
| uncharacterized protein (upf0261 family) | CLV88_11489 | Not Available | Negative | 3610055 - 3611287 | 43179.6 |
| ser/thr protein kinase rdoa (mazf antagonist) | CLV88_11490 | Not Available | Negative | 3611284 - 3612216 | 34966.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
